downloadTemplate: Downloads resources and template for a standard analysis
In ChristofferFlensburg/superFreq: Calls and tracks CNAs, SNVs and clones over multiple cancer exomes.
downloadTemplate R Documentation
Downloads resources and template for a standard analysis
Description
Downloads resources and template for a standard analysis
Usage
downloadTemplate(analysisDirectory)
Arguments
analysisDirectory
The directory where the analysis will be made. The directory will be created
if needed, but the parent directory has to exist.
Details
This function downloads dbSNP and COSMIC resources for hg19, condensed to what superFreq needs.
It also sets up template files and directories to help set up the project specific data.
Examples
## Not run:
downloadTemplate('~/mySuperFreqAnalaysis')
## End(Not run)
ChristofferFlensburg/superFreq documentation built on June 2, 2025, 10:28 a.m.
R Package Documentation
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| downloadTemplate | R Documentation |
Downloads resources and template for a standard analysis
Description
Downloads resources and template for a standard analysis
Usage
downloadTemplate(analysisDirectory)
Arguments
analysisDirectory |
The directory where the analysis will be made. The directory will be created if needed, but the parent directory has to exist. |
Details
This function downloads dbSNP and COSMIC resources for hg19, condensed to what superFreq needs. It also sets up template files and directories to help set up the project specific data.
Examples
## Not run:
downloadTemplate('~/mySuperFreqAnalaysis')
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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