View source: R/genesOfInterest.R
getCohortMutationMatrix | R Documentation |
returns relevant mutations in samples in Genes of Interest
getCohortMutationMatrix(
GoI,
Rdirectory,
metaDataFile,
excludeIndividuals = c(),
excludeSamples = c(),
GoIakas = c(),
cpus = 1,
includeGermlineLike = T
)
GoI |
character vector. Genes of interest for the analysis |
Rdirectory |
character The Rdirectory where the superFreq run was run. |
This function plots a mutation matrix showing CNAs and point mutations in the Genes of Interest across the analysed samples in the Rdirectory. Should be run after the superFreq() run has completed.
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