getVariantsByIndividual: Quality controls the variants in the vcfs, using the bams.
In ChristofferFlensburg/superFreq: Calls and tracks CNAs, SNVs and clones over multiple cancer exomes.
View source: R/getVariantsByIndividual.R
getVariantsByIndividual R Documentation
Quality controls the variants in the vcfs, using the bams.
Description
Quality controls the variants in the vcfs, using the bams.
Usage
getVariantsByIndividual(
metaData,
captureRegions,
fasta,
genome,
BQoffset,
dbDir,
Rdirectory,
plotDirectory,
cpus,
exacPopulation = "all",
forceRedo = F,
filterOffTarget = T
)
ChristofferFlensburg/superFreq documentation built on Nov. 15, 2023, 6:15 a.m.
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View source: R/getVariantsByIndividual.R
| getVariantsByIndividual | R Documentation |
Quality controls the variants in the vcfs, using the bams.
Description
Quality controls the variants in the vcfs, using the bams.
Usage
getVariantsByIndividual(
metaData,
captureRegions,
fasta,
genome,
BQoffset,
dbDir,
Rdirectory,
plotDirectory,
cpus,
exacPopulation = "all",
forceRedo = F,
filterOffTarget = T
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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