printHTML: generates an HTML to navigate superFreq output

In ChristofferFlensburg/superFreq: Calls and tracks CNAs, SNVs and clones over multiple cancer exomes.

generates an HTML to navigate superFreq output

Description

generates an HTML to navigate superFreq output

Usage

printHTML(metaDataFile, outputFile)

Arguments

metaDataFile	Character. A path to the meta data file used for the run.
outputFile	Character. A path to where the HTML is stored. Has to be inside the plotDirectory for now.

Details

This function is in pre-alpha development as of version 0.9.23. Feel free (please!) to add to this on github even without any html experience. I dont have any. The function generates a .html that should link the plots and explanation of how to interpret the plots, how they were generated and how to get the raw data for further analysis. Ideally there should be a good landing page as well for overview.

Examples

## Not run: 
metaDataFile = 'metaData.tsv'
plotDirectory='plots'

printHTML(metaDataFile=metaDataFile, outputFile=paste0(plotDirectory, '/superFreq.html'))

## End(Not run)

ChristofferFlensburg/superFreq documentation built on Nov. 15, 2023, 6:15 a.m.