View source: R/genesOfInterest.R
plotCNAheatmapOverGoI | R Documentation |
plots a heatmap of copy numbers, focusing on a gene of interest
plotCNAheatmapOverGoI(
gene,
Rdirectory,
genome,
metaDataFile,
excludeIndividuals = c(),
excludeSamples = c(),
GoIakas = c(),
cpus = 1,
padding = 3e+06
)
Rdirectory |
character The Rdirectory where the superFreq run was run. |
genome |
character. The genome the sample is aligned to. 'hg19', 'hg38' or 'mm10' |
padding |
numeric. How many basepairs next to the gene to show. default 3e6. |
GoI |
character vector. Genes of interest. |
This function plots a heatmap of copy numbers across the samples, focused at a gene of interest. Can be run after the superFreq run is completed.
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