Files in EmanuelSoda/ScreenR
Package to Perform High Throughput Biological Screening
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/ScreenR-package.R
R/annotation_table.R
R/barcode_lost.R
R/camera_method.R
R/compute_data_table.R
R/compute_metrics.R
R/count_mapped_reads.R
R/count_table.R
R/create_object.R
R/distribution_mapped_reads.R
R/filter_by.R
R/find_common_hit.R
R/find_roast_hit.R
R/find_robust_zscore_hit.R
R/find_zscore_hit.R
R/generics.R
R/mapped_reads.R
R/normalize_data.R
R/plot_barcode_hit.R
R/plot_barcode_trend.R
R/plot_boxplot.R
R/plot_mapped_reads.R
R/plot_mds.R
R/plot_trend.R
R/plot_zscore_distribution.R
R/screenr-class.R
R/sysdata.rda
R/zzz.R
README.Rmd
README.knit.md
README.md
_pkgdown.yml
codecov.yml
data/annotation_table.rda
data/count_table.rda
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Analysis_Example.html
docs/articles/Analysis_Example_files/figure-html/Plot_MDS_Day-1.png
docs/articles/Analysis_Example_files/figure-html/Plot_MDS_Sample-1.png
docs/articles/Analysis_Example_files/figure-html/Plot_MDS_Treatment-1.png
docs/articles/Analysis_Example_files/figure-html/Venn_diagram_in_at_least_2-1.png
docs/articles/Analysis_Example_files/figure-html/compute_metrics-1.png
docs/articles/Analysis_Example_files/figure-html/plot_barcode_lost-1.png
docs/articles/Analysis_Example_files/figure-html/plot_mapped_reads-1.png
docs/articles/index.html
docs/authors.html
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/barcode_lost.html
docs/reference/compute_camera.html
docs/reference/compute_data_table.html
docs/reference/compute_explained_variance.html
docs/reference/compute_metrics.html
docs/reference/compute_slope.html
docs/reference/count_mapped_reads.html
docs/reference/figures/logo.png
docs/reference/filter_by_slope.html
docs/reference/filter_by_variance.html
docs/reference/find_camera_hit.html
docs/reference/find_common_hit.html
docs/reference/find_roast_hit.html
docs/reference/find_robust_zscore_hit.html
docs/reference/find_zscore_hit.html
docs/reference/index.html
docs/reference/mapped_reads.html
docs/reference/normalize_data.html
docs/reference/plot_barcode_hit-1.png
docs/reference/plot_barcode_hit.html
docs/reference/plot_barcode_lost-1.png
docs/reference/plot_barcode_lost.html
docs/reference/plot_barcode_lost_for_gene-1.png
docs/reference/plot_barcode_lost_for_gene-2.png
docs/reference/plot_barcode_lost_for_gene.html
docs/reference/plot_barcode_trend.html
docs/reference/plot_boxplot-1.png
docs/reference/plot_boxplot.html
docs/reference/plot_common_hit-1.png
docs/reference/plot_common_hit.html
docs/reference/plot_mapped_reads-1.png
docs/reference/plot_mapped_reads.html
docs/reference/plot_trend-1.png
docs/reference/plot_trend-2.png
docs/reference/plot_trend.html
docs/reference/select_number_barcode.html
docs/reference/unique_gene_symbols.html
docs/sitemap.xml
inst/WORDLIST
man/ScreenR-package.Rd
man/annotation_table.Rd
man/barcode_lost.Rd
man/compute_camera.Rd
man/compute_data_table.Rd
man/compute_explained_variance.Rd
man/compute_metrics.Rd
man/compute_slope.Rd
man/compute_trend.Rd
man/count_mapped_reads.Rd
man/count_table.Rd
man/create_edger_obj.Rd
man/create_screenr_object.Rd
man/figures/Pipeline.png
man/figures/logo.png
man/filter_by_slope.Rd
man/filter_by_variance.Rd
man/find_camera_hit.Rd
man/find_common_hit.Rd
man/find_roast_hit.Rd
man/find_robust_zscore_hit.Rd
man/find_zscore_hit.Rd
man/get_annotation_table.Rd
man/get_count_table.Rd
man/get_data_table.Rd
man/get_groups.Rd
man/get_normalized_count_table.Rd
man/get_replicates.Rd
man/mapped_reads.Rd
man/normalize_data.Rd
man/plot_barcode_hit.Rd
man/plot_barcode_lost.Rd
man/plot_barcode_lost_for_gene.Rd
man/plot_barcode_trend.Rd
man/plot_boxplot.Rd
man/plot_common_hit.Rd
man/plot_explained_variance.Rd
man/plot_mapped_reads.Rd
man/plot_mapped_reads_distribution.Rd
man/plot_mds.Rd
man/plot_trend.Rd
man/plot_zscore_distribution.Rd
man/remove_all_zero_row.Rd
man/select_number_barcode.Rd
man/set_annotation_table.Rd
man/set_count_table.Rd
man/set_data_table.Rd
man/set_groups.Rd
man/set_normalized_count_table.Rd
man/set_replicates.Rd
man/unique_gene_symbols.Rd
pkgdown.yml
pkgdown/_pkgdown.yaml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test-MDS.R
tests/testthat/test-compute.R
tests/testthat/test-filter.R
tests/testthat/test-find_hits.R
tests/testthat/test-object.R
tests/testthat/test-statistics.R
tests/testthat/test-visualization.R
vignettes/.gitignore
vignettes/Analysis_Example.Rmd
