find_zscore_hit: Title Find Z-score Hit

In EmanuelSoda/ScreenR: Package to Perform High Throughput Biological Screening

Title Find Z-score Hit

Description

Title Find Z-score Hit

Usage

find_zscore_hit(table_treate_vs_control, number_barcode = 6, metric = "median")

Arguments

table_treate_vs_control	table computed with the function compute_data_table
number_barcode	Number of barcode that as to be differentially expressed (DE)in order to consider the gene associated DE. Example a gene is associated with 10 shRNA we consider a gene DE if it has at least number_barcode = 5 shRNA DE.
metric	A string containing the metric to use. The value allowed are "median" or "mean".

Value

Return a tibble containing the hit for the Z-score

Examples

object <- get0("object", envir = asNamespace("ScreenR"))
table <- compute_metrics(object,
    control = "TRT", treatment = "Time3",
    day = "Time3"
)

# For the the median
result <- find_zscore_hit(table, number_barcode = 6)
head(result)

# For the mean
result <- find_zscore_hit(table, number_barcode = 6, metric = "mean")
head(result)

EmanuelSoda/ScreenR documentation built on Sept. 29, 2023, 12:33 a.m.