plot_trend: Plot the trend hit gene

In EmanuelSoda/ScreenR: Package to Perform High Throughput Biological Screening

Plot the trend hit gene

Description

This function plot the trend of a gene resulted as hit

Usage

plot_trend(
  screenR_Object,
  genes,
  group_var,
  alpha = 0.5,
  se = FALSE,
  point_size = 1,
  line_size = 1,
  nrow = 1,
  ncol = 1,
  scales = "free"
)

Arguments

screenR_Object	The ScreenR object obtained using the create_screenr_object
genes	The vector of genes to use
group_var	The variable that as to be used to filter the data, for example the different treatment
alpha	A value for the opacity of the plot. Allowed values are in the range 0 to 1
se	A boolean to indicate where or not to plot the standard error
point_size	The dimension of each dot
line_size	The dimension of the line
nrow	The number of rows in case multiple genes are plotted
ncol	The number of columns in case multiple genes are plotted
scales	The scales to be used in the facette

Value

The plot of the trend over time for a specific treatment.

Examples

object <- get0("object", envir = asNamespace("ScreenR"))

plot_trend(object, genes = "Gene_42", group_var = c("T1", "T2", "TRT"))

plot_trend(object,
    genes = c("Gene_42", "Gene_100"),
    group_var = c("T1", "T2", "TRT"),
    nrow = 2
)

EmanuelSoda/ScreenR documentation built on Sept. 29, 2023, 12:33 a.m.