Man pages for EmanuelSoda/ScreenR
Package to Perform High Throughput Biological Screening
| annotation_table | Table for the annotation of Barcode |
| barcode_lost | Count number of barcode lost |
| compute_camera | Compute Camera |
| compute_data_table | Compute data Table |
| compute_explained_variance | Compute explained variance |
| compute_metrics | Compute Metrics |
| compute_slope | Compute Slope of a Gene |
| compute_trend | Compute trend |
| count_mapped_reads | Count the number of mapped read |
| count_table | Table of the count table |
| create_edger_obj | Create edgeR Object |
| create_screenr_object | Create the ScreenR Object |
| filter_by_slope | Filter using the slope filter |
| filter_by_variance | Filter using the variance filter |
| find_camera_hit | Find Camera Hit |
| find_common_hit | Find common hit |
| find_roast_hit | Find Roast Hit |
| find_robust_zscore_hit | Title Find robust Z-score Hit |
| find_zscore_hit | Title Find Z-score Hit |
| get_annotation_table | Get ScreenR annotation table |
| get_count_table | Get ScreenR count table |
| get_data_table | Get ScreenR data_table |
| get_groups | Get ScreenR groups |
| get_normalized_count_table | Get ScreenR normalized_count_table |
| get_replicates | Get ScreenR replicates |
| mapped_reads | Mapped Reads |
| normalize_data | Normalize data |
| plot_barcode_hit | Plot barcode hit |
| plot_barcode_lost | Plot number of barcode lost |
| plot_barcode_lost_for_gene | Plot number of barcode lost for gene |
| plot_barcode_trend | Plot the trend over time of the barcodes |
| plot_boxplot | Plot Barcodes Hit |
| plot_common_hit | Plot common hit |
| plot_explained_variance | Plot the explained variance by the PC |
| plot_mapped_reads | Plot mapped reads |
| plot_mapped_reads_distribution | Plot the distribution of the mapped reads |
| plot_mds | Multidimensional Scaling Plot |
| plot_trend | Plot the trend hit gene |
| plot_zscore_distribution | Plot distribution Z-score |
| remove_all_zero_row | Remove rows that have zero count in all samples |
| ScreenR-package | Tools for analyzing shRNAs screening data |
| select_number_barcode | Select number of Barcode |
| set_annotation_table | Set ScreenR annotation table |
| set_count_table | Set ScreenR count table |
| set_data_table | Set ScreenR data_table |
| set_groups | Set ScreenR groups |
| set_normalized_count_table | Set ScreenR normalized_count_table |
| set_replicates | Set ScreenR replicates |
| unique_gene_symbols | Unique gene Symbols |
