align_short_reads: Aligns metagenomic shotgun reads against a reference.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
align_short_reads R Documentation
Aligns metagenomic shotgun reads against a reference.
Description
This method uses bowtie2 and should not be too sensitive to the used pre-
processing.
Usage
align_short_reads(object, ...)
Arguments
object
An artifact or list of files.
...
Configuration arguments or a configuration object as obtained by
config_align.
Value
A list with the generated alignments and some general diagnostics.
Examples
NULL
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| align_short_reads | R Documentation |
Aligns metagenomic shotgun reads against a reference.
Description
This method uses bowtie2 and should not be too sensitive to the used pre- processing.
Usage
align_short_reads(object, ...)
Arguments
object |
An artifact or list of files. |
... |
Configuration arguments or a configuration object as obtained by
|
Value
A list with the generated alignments and some general diagnostics.
Examples
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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