merge_transcripts: Merge transcripts into a single database

In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis

Merge transcripts into a single database

Description

Merge transcripts into a single database

Usage

merge_transcripts(
  transcript_files,
  transcript_folder,
  what = "cdna",
  out = "ensembl_transcripts.fa.gz"
)

Arguments

transcript_files	A data table as returned by download_bacterial_transcripts.
transcript_folder	In which folder to look for transcripts.
what	The type of database, either "cdna" or "protein".
out	The filename for the DB. Will be compressed and saved in the transcript folder.

Value

The transcript counts for each file.

Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.