mockrobiota: Downloads a complete data set from mockrobiota.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
mockrobiota R Documentation
Downloads a complete data set from mockrobiota.
Description
Downloads a complete data set from mockrobiota.
Usage
mockrobiota(name, folder, quiet = !interactive())
Arguments
name
Name of the mockrobiota data set.
folder
Where to save the data.
quiet
Whether to show download progress.
Value
A list with the following components
- description
A description of the data set.
- forward
Filepath to the forward reads.
- reverse
Filepath to the reverse reads.
- index
Filepath to the index file.
- citation
Reference for the data set.
- fragment
Which fragment(s) were sequenced.
- equipment
The used sequencing equipment.
- samples
A data frame mapping samples to barcodes.
- ps_gg
The reference phyloseq object using the green genes taxonomy.
- ps_silva
The reference phyloseq object using the silva taxonomy.
Examples
NULL
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| mockrobiota | R Documentation |
Downloads a complete data set from mockrobiota.
Description
Downloads a complete data set from mockrobiota.
Usage
mockrobiota(name, folder, quiet = !interactive())
Arguments
name |
Name of the mockrobiota data set. |
folder |
Where to save the data. |
quiet |
Whether to show download progress. |
Value
A list with the following components
- description
A description of the data set.
- forward
Filepath to the forward reads.
- reverse
Filepath to the reverse reads.
- index
Filepath to the index file.
- citation
Reference for the data set.
- fragment
Which fragment(s) were sequenced.
- equipment
The used sequencing equipment.
- samples
A data frame mapping samples to barcodes.
- ps_gg
The reference phyloseq object using the green genes taxonomy.
- ps_silva
The reference phyloseq object using the silva taxonomy.
Examples
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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