download_sra: Download data from SRA.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
View source: R/workflow_download.R
download_sra R Documentation
Download data from SRA.
Description
To use this function first obtain a RunInfo Table as described at
https://www.ncbi.nlm.nih.gov/Traces/study/?go=help.
Usage
download_sra(
runtable,
path = "sra/",
retries = 3,
threads = getOption("mc.cores", 1)
)
Arguments
runtable
Path to a runtable as selected in the SRA interface.
path
The folder into which to download the FASTQ files.
retries
How often to try downloading again after failure.
threads
Maximum number of parallel file downloads.
Value
The list of files with indicated download success.
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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View source: R/workflow_download.R
| download_sra | R Documentation |
Download data from SRA.
Description
To use this function first obtain a RunInfo Table as described at https://www.ncbi.nlm.nih.gov/Traces/study/?go=help.
Usage
download_sra(
runtable,
path = "sra/",
retries = 3,
threads = getOption("mc.cores", 1)
)
Arguments
runtable |
Path to a runtable as selected in the SRA interface. |
path |
The folder into which to download the FASTQ files. |
retries |
How often to try downloading again after failure. |
threads |
Maximum number of parallel file downloads. |
Value
The list of files with indicated download success.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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