config_align: Build a configuration for the alignment workflows.

In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis

Build a configuration for the alignment workflows.

Description

This can be saved and passed on to others to ensure reproducibility.

Usage

config_align(...)

Arguments

...	Any arguments are used to update the default configuration. See the example below. Optional.

Value

A list with the parameters used in the long read alignment workflow.

Examples

 config <- config_align(reference = "refs/mouse.fna.gz")

Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.