mothur_to_dada: Converts taxa annotations from mothur format to dada2 format.
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
mothur_to_dada R Documentation
Converts taxa annotations from mothur format to dada2 format.
Description
Converts taxa annotations from mothur format to dada2 format.
Usage
mothur_to_dada(seq_file, taxa_file, out = "taxonomy.fa.gz")
Arguments
seq_file
A fasta file containing the (cluster) sequences.
taxa_file
A tab-separated file with IDs on the first column and
taxonomy in the second column.
out
Filename for the compressed output file.
Value
Nothing.
Examples
NULL
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| mothur_to_dada | R Documentation |
Converts taxa annotations from mothur format to dada2 format.
Description
Converts taxa annotations from mothur format to dada2 format.
Usage
mothur_to_dada(seq_file, taxa_file, out = "taxonomy.fa.gz")
Arguments
seq_file |
A fasta file containing the (cluster) sequences. |
taxa_file |
A tab-separated file with IDs on the first column and taxonomy in the second column. |
out |
Filename for the compressed output file. |
Value
Nothing.
Examples
NULL
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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