effective_lengths: Calculate the effective transcript lengths. This is the mean...
In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis
effective_lengths R Documentation
Calculate the effective transcript lengths. This is the mean number of
positions in the transcript the fragment could map to.
Description
Calculate the effective transcript lengths. This is the mean number of
positions in the transcript the fragment could map to.
Usage
effective_lengths(txlengths, rdlengths)
Arguments
txlengths
The sequence lengths for each transcript.
rdlengths
The length of all mapped fragments. Mapped length of the
read after accounting for mismatches and indels.
Value
The effective lengths.
Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.
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| effective_lengths | R Documentation |
Calculate the effective transcript lengths. This is the mean number of positions in the transcript the fragment could map to.
Description
Calculate the effective transcript lengths. This is the mean number of positions in the transcript the fragment could map to.
Usage
effective_lengths(txlengths, rdlengths)
Arguments
txlengths |
The sequence lengths for each transcript. |
rdlengths |
The length of all mapped fragments. Mapped length of the read after accounting for mismatches and indels. |
Value
The effective lengths.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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