config_count: Build a configuration for the transcript counting workflow.

In Gibbons-Lab/mbtools: Provides helper functions for microbiome preprocessing and analysis

Build a configuration for the transcript counting workflow.

Description

This can be saved and passed on to others to ensure reproducibility.

Usage

config_count(...)

Arguments

...	Any arguments are used to update the default configuration. See the example below. Optional.

Value

A list with the parameters used in the transcript counting workflow.

Examples

 config <- config_count(reference = "refs/mouse.fna.gz")

Gibbons-Lab/mbtools documentation built on Jan. 28, 2024, 11:08 a.m.