FGSEA_GSEA: FGSEA enrichment analysis
In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis

FGSEA_GSEA

R Documentation

FGSEA enrichment analysis

Description

Creates a gene set enrichment analysis using fgsea a given table by the given column name. It requires a GENE_SYMBOL column to include gene IDs.

Usage

FGSEA_GSEA(
  gene_list_provided,
  myGeneSet,
  title_given = "example",
  nproc_given = 2,
  minSize = 10,
  maxSize = 600,
  nPermSimple = 10000,
  padj.thres = 0.25
)

Arguments

`gene_list_provided`	Named list ranked by either pvalue, logFC, padj
`myGeneSet`	Gene set data as a list of lists
`title_given`	Title to include in the ggplot generated
`nproc_given`	Number of threads to use