create_matrix_overlaps_by_seqnames: Create matrix of region overlaps (by sequence)
In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis
View source: R/GDAcyto_functions.R
create_matrix_overlaps_by_seqnames R Documentation
Create matrix of region overlaps (by sequence)
Description
This functions takes a genomicRanges object and using regioneR::numOverlaps creates a matrix of
overlapping regions by sequence.
Usage
create_matrix_overlaps_by_seqnames(GR.list_given, list_of_chrs = c(1:22))
Arguments
GR.list_given
List of Genomic ranges objects per sample
list_of_chrs
List of seq IDs to use, by default chromosomes 1-22.
HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.
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View source: R/GDAcyto_functions.R
| create_matrix_overlaps_by_seqnames | R Documentation |
Create matrix of region overlaps (by sequence)
Description
This functions takes a genomicRanges object and using regioneR::numOverlaps creates a matrix of overlapping regions by sequence.
Usage
create_matrix_overlaps_by_seqnames(GR.list_given, list_of_chrs = c(1:22))
Arguments
GR.list_given |
List of Genomic ranges objects per sample |
list_of_chrs |
List of seq IDs to use, by default chromosomes 1-22. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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