filter_dmpFinder_table: Filter dmpFinder methylation stats

In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis

Filter dmpFinder methylation stats

Description

This functions obtains a mean beta value for each group of samples and filters based on statistics

Usage

filter_dmpFinder_table(
  dmpData,
  beta_val,
  list1,
  list2,
  pval = 0.05,
  qval = 0.05,
  diff.mean = 0.2
)

Arguments

dmpData	Dataframe with probes as rownames
beta_val	Dataframe containing beta_values for each probe and sample (columns)
list1	Vector of samples to test fro group2
pval	Pvalue filtering cutoff. Default: 0.05
qval	Pvalue adjusted filtering cutoff. Default: 0.05
diff.mean	Mean difference (absolute values) for filtering

HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.