create_report: Annotates GR Report for each region of bumps provided
In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis
View source: R/EPIC_functions.R
create_report R Documentation
Annotates GR Report for each region of bumps provided
Description
This functions create a GR object with the regions of interest from bump_table provided
Usage
create_report(bump_table, out_report, df_chr, EPIC = "v2")
Arguments
bump_table
Bumphunter dataframe
out_report
Not used anymore, to be discarded
df_chr
Dataframe generated as in get_chr_len() containing names and length for each Chromosome of interest
EPIC
Set v1 or v2 for annotation. It uses hg19 for EPICv1 or hg38 for EPICv2. Default: v2
HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.
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View source: R/EPIC_functions.R
| create_report | R Documentation |
Annotates GR Report for each region of bumps provided
Description
This functions create a GR object with the regions of interest from bump_table provided
Usage
create_report(bump_table, out_report, df_chr, EPIC = "v2")
Arguments
bump_table |
Bumphunter dataframe |
out_report |
Not used anymore, to be discarded |
df_chr |
Dataframe generated as in get_chr_len() containing names and length for each Chromosome of interest |
EPIC |
Set v1 or v2 for annotation. It uses hg19 for EPICv1 or hg38 for EPICv2. Default: v2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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