exploratory_plots: Exploratory plots for DESEQ2 analysis
In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis
View source: R/DESeq2_functions.R
exploratory_plots R Documentation
Exploratory plots for DESEQ2 analysis
Description
When running DESeq2 you usually add multiple terms to the matrix design. Test the effect of them
Usage
exploratory_plots(
dds_object.exp,
OUTPUT_dir,
dfAnnotation_df,
list_of_cols,
forceResults = FALSE
)
Arguments
dds_object.exp
DESeq2 object (DESeqDataSet)
OUTPUT_dir
Absolute path to store results
dfAnnotation_df
Dataframe with useful metadata to include
list_of_cols
List of columns of interest to subset from metadata
forceResults
Boolean to force re-run analysis if already generated in the folder provided
HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.
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View source: R/DESeq2_functions.R
| exploratory_plots | R Documentation |
Exploratory plots for DESEQ2 analysis
Description
When running DESeq2 you usually add multiple terms to the matrix design. Test the effect of them
Usage
exploratory_plots(
dds_object.exp,
OUTPUT_dir,
dfAnnotation_df,
list_of_cols,
forceResults = FALSE
)
Arguments
dds_object.exp |
DESeq2 object (DESeqDataSet) |
OUTPUT_dir |
Absolute path to store results |
dfAnnotation_df |
Dataframe with useful metadata to include |
list_of_cols |
List of columns of interest to subset from metadata |
forceResults |
Boolean to force re-run analysis if already generated in the folder provided |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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