dreduction_function: Creates dimension reduction plots using RnBead object

In HCGB-IGTP/HCGB.IGTP.DAnalysis: Useful in-house functions for multiple analysis

Creates dimension reduction plots using RnBead object

Description

This functions creates dimension reduction (PCA & MDS) for RnBead co

Usage

dreduction_function(
  rnb.set_given,
  vars_dreduction,
  methods_dreduction,
  point_types_column,
  plot_dir
)

Arguments

rnb.set_given	RnBeads rnb.set object
vars_dreduction	Suspected variables to include in plot
methods_dreduction	Methods for dimension reduction
point_types_column	Column in annotation dataframe to use for naming samples.
plot_dir	Folder to save plot results

HCGB-IGTP/HCGB.IGTP.DAnalysis documentation built on April 13, 2025, 12:03 a.m.