readLSJdata: Read the data on reads spanning linear splice junctions

In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data

Description

The function takes a circSample or circExperiment object and reads the chimeric data for samples described in these objects (SJ.out.tab file).

Usage

readLSJdata(object, chromosomes = c(1:22, "X", "Y"), cores = 1L, ...)

Arguments

object	circSample or circExperiment object
chromosomes	A vector of (valid) chromosome names that is used to restrict the chimeric read data
cores	Only supported on unix! Number of cores used for parallel processing for circExperiment objets.

Value

Same as input object, but populated slot for lsj counts.

Examples

#readLSJdata(object)

KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.