Get_Cor: Compare the correlations between clusters in one/two...

In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process

Description

Compare the correlations between clusters in one/two seurat.obj, only in mouse or human

Usage

Get_Cor(
  seurat.1,
  seurat.2 = NULL,
  species.1 = "mouse",
  gene = NULL,
  species.2 = "mouse",
  method = "pearson"
)

Arguments

seurat.1	seurat.obj1
seurat.2	seurat.obj2, could be NULL
species.1	the species of the seuart.obj1, 'mouse' (default)
gene	To Compare the correlations in the genes you interested
species.2	the species of the seuart.obj2 (default)
method	One of "pearson" (default), "kendall", or "spearman": can be abbreviated.

Value

the data.frame of the correlations between cluster in two seurat.obj

Examples

## Not run: 
input.file <- system.file('extdata','pbmc_1k.RDS',package = 'LIANLABDATA')
pbmc_1k <- readRDS(input.file)
Get_Cor(pbmc_1k,species.1 = 'mouse')

## End(Not run)

Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.