Get_GSEA: Title

In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process

Description

Title

Usage

Get_GSEA(
  object,
  species = c("m", "h"),
  category = NULL,
  filename = NULL,
  p.valueCutoff = 0.05
)

Arguments

object	DEG data.frame or matrix, including col named 'avg_logFC'
species	species of DEG
category	geneset in GSEA, including 'c2'(default),'c3','c4','c5','c6','c7','hallmark'
filename	the name of the generated file
p.valueCutoff	cut off the p value

Value

result of the gsea

Examples

## Not run: 
input.file <- system.file('extdata','DEG.csv',package = 'LIANLABDATA')
markers <- read.csv(input.file,header = T, row.names = 1)
result <- Get_GSEA( markers,species = 'm',category='c2')

## End(Not run)

Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.