Get_GK2: GO and KEGG analyse of the result between two clusters

In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process

Description

GO and KEGG analyse of the result between two clusters

Usage

Get_GK2(marker, species = c("m", "h"), logfc.cutoff = 0.1, p.cutoff = 0.01)

Arguments

marker	result of FindMarkers() or other,including cols named avg_log2FC, p_val_adj, gene
species	m/h
logfc.cutoff	cut off the logFC
p.cutoff	cut off the p value

Examples

## Not run: 
input.file <- system.file('extdata','DEG.csv',package = 'LIANLABDATA')
markers <- read.csv(input.file,header = T, row.names = 1)
Get_GK2( markers_top,species = 'm')

## End(Not run)

Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.