top_m: Get DE genes in ave_logFC
In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process
Description
Usage
Arguments
Value
Examples
Description
Get DE genes in ave_logFC
Usage
1
top_m(markers, m)
Arguments
markers
the result of FindAllMarkers(), including the col named "cluster"
m
the number of the genes in top
Value
a data.frame has the genes in top you choose
Examples
1
2
3
4
5
6
## Not run:
input.file <- system.file('extdata','DEG.csv',package = 'LIANLABDATA')
markers <- read.csv(input.file,header = T, row.names = 1)
markers_top <- top_m( markers, m = 20)
## End(Not run)
Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Get DE genes in ave_logFC
Usage
1 | top_m(markers, m)
|
Arguments
markers |
the result of FindAllMarkers(), including the col named "cluster" |
m |
the number of the genes in top |
Value
a data.frame has the genes in top you choose
Examples
1 2 3 4 5 6 | ## Not run:
input.file <- system.file('extdata','DEG.csv',package = 'LIANLABDATA')
markers <- read.csv(input.file,header = T, row.names = 1)
markers_top <- top_m( markers, m = 20)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.