myvolcano: Volcano for DE genes.

In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process

Description

Volcano for DE genes.

Usage

myvolcano(df, gene.plot = 10, logfc.cutoff = 0.5, p.cutoff = 0.01)

Arguments

df	DE gene matrix, including cols named avg_log2FC and p_val_adj
gene.plot	number of tags for genes
logfc.cutoff	cutoff of logFC
p.cutoff	cutoff of p value

Value

DE genes

Examples

## Not run: 
input.file <- system.file('extdata','DEG.csv',package = 'LIANLABDATA')
DEG_matrix <- read.csv(input.file, header = TRUE, row.names = 1)
DEG <- myvolcano(df = DEG_matrix, gene.plot = 10, logfc.cutoff = 0.5, p.cutoff = 0.01)

## End(Not run)

Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.