stacked_violin_plot: This function is used to plot the stacked violinplot of...

In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process

Description

This function is used to plot the stacked violinplot of single cell RNAseq data

Usage

stacked_violin_plot(
  gene,
  seurat_object,
  cluster = NULL,
  limits.max = 7,
  width = 13,
  height = 10.3,
  flip = T,
  filename = "",
  text.size = 10,
  Mean = T,
  col = NULL
)

Arguments

gene	a vector of the genes name to plot
seurat_object	the seurat object of your data
cluster	choose to cluster you interested
limits.max	numeric,the max legend value to regulate the color levels
width	the width of the figure
height	the height of the figure
flip	logical,set the direction of coordinate axis
filename	the name of the generated file
text.size	numeric,the text size of gene names
Mean	whether choose to mean
col	col of the figure

Details

This function is used to plot the stacked violinplot of single cell RNAseq data or any seurat object for specified genes expressed on celltype clusters.

Examples

## Not run: 
input.file <- system.file('extdata','pbmc_1k.RDS',package = 'LIANLABDATA')
pbmc_1k <- readRDS(input.file)
gene=c('CD8A','CD4')

## End(Not run)

Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.