cluster_annotate: annotate the celltype for cluster in the seurat.obj

In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process

Description

annotate the celltype for cluster in the seurat.obj

Usage

cluster_annotate(
  seurat_object,
  cluster_markers = NULL,
  filename = "",
  width = 4,
  height = 2.5,
  n_col = NULL
)

Arguments

seurat_object	annotation of the seurat.obj
cluster_markers	marker genes of celltypes
filename	the name of the generated file
width	width of the figure
height	height of the figure
n_col	ncol for the vlnplot

Value

a seurat.obj with annotation

Examples

## Not run: 
data(common_cluster,package="LIANLAB")
input.file <- system.file('extdata','pbmc_1k.RDS',package = 'LIANLABDATA')
pbmc_1k <- readRDS(input.file)
pbmc_1k <- cluster_annotate( seurat_object = pbmc_1k, cluster_markers = common_cluster)

## End(Not run)

Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.