plot_violin_manual: plot the stacked violinplot of single cell RNAseq data

In Lian-Lab/LIANLAB: To integrate analysis methods and simplify analysis process

Description

plot the stacked violinplot of single cell RNAseq data

Usage

plot_violin_manual(
  gene,
  seurat_object,
  cluster = NULL,
  axis = FALSE,
  legend_position = "none",
  limits.max = 7,
  gene_name = FALSE,
  width = 3.6,
  height = 2,
  flip = F
)

Arguments

gene	a vector of the genes name to plot
seurat_object	the seurat object of your data
cluster	choose to cluster you interested
axis	logical,set the hidden axes
legend_position	position of legend
limits.max	numeric,the max legend value to regulate the color levels
gene_name	logical, set gene titile bold
width	the width of the figure
height	the height of the figure
flip	logical, set the direction of coordinate axis

Examples

## Not run: 
input.file <- system.file('extdata','pbmc_1k.RDS',package = 'LIANLABDATA')
pbmc_1k <- readRDS(input.file)

## End(Not run)

Lian-Lab/LIANLAB documentation built on June 23, 2021, 5:37 a.m.