Files in MRCIEU/gwasvcf
Tools for Dealing with GWAS Summary Data in VCF Format
.Rbuildignore
.devcontainer/devcontainer.json
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/binaries.r
R/gwasglue.R
R/manipulate.r
R/proxy.r
R/pval_index.r
R/query.r
R/rsid_index.r
R/utils-pipe.R
R/zzz.r
README.md
_pkgdown.yml
gwasvcf.Rproj
inst/extdata/data.vcf.gz
inst/extdata/data.vcf.gz.tbi
inst/extdata/eur.bed
inst/extdata/eur.bim
inst/extdata/eur.fam
inst/sandpit/bmi_example.r
inst/sandpit/bmi_example_cp.r
inst/sandpit/harmonise_against_ref.r
inst/sandpit/misc/create_ref.sh
inst/sandpit/misc/harmonise.r
inst/sandpit/misc/harmonise_against_ref.r
inst/sandpit/misc/query_times.html
inst/sandpit/misc/query_times.rmd
inst/sandpit/misc/skeleton.sh
inst/sandpit/misc/vcf.html
inst/sandpit/misc/vcf.rmd
inst/sandpit/test_extract.r
man/VariantAnnotation.Rd
man/check_bcftools.Rd
man/check_plink.Rd
man/create_ldref_sqlite.Rd
man/create_pval_index_from_vcf.Rd
man/create_rsidx_index_from_vcf.Rd
man/create_rsidx_sub_index.Rd
man/create_vcf.Rd
man/get_ld_proxies.Rd
man/gwasvcf_to_summaryset.Rd
man/merge_vcf.Rd
man/parse_chrompos.Rd
man/pipe.Rd
man/proxy_match.Rd
man/query_chrompos_bcftools.Rd
man/query_chrompos_file.Rd
man/query_chrompos_vcf.Rd
man/query_gwas.Rd
man/query_pval_bcftools.Rd
man/query_pval_file.Rd
man/query_pval_sqlite3.Rd
man/query_pval_vcf.Rd
man/query_pvali.Rd
man/query_rsid_bcftools.Rd
man/query_rsid_file.Rd
man/query_rsid_rsidx.Rd
man/query_rsid_vcf.Rd
man/query_rsidx.Rd
man/set_bcftools.Rd
man/set_plink.Rd
man/sqlite_ld_proxies.Rd
man/vcf_to_granges.Rd
man/vcf_to_tibble.Rd
man/vcflist_overlaps.Rd
tests/testthat.R
tests/testthat/test_manipulate.r
tests/testthat/test_proxy.R
tests/testthat/test_pvali.r
tests/testthat/test_query.r
tests/testthat/test_rsidx.r
vignettes/guide.Rmd
