findxnextneighbors: Find next neighbors of transcription factors in identified...

In MarenS2/pwOmics_maren: Pathway-based data integration of omics data

Description

Find next neighbors of transcription factors in identified pathways.

Produces a list of x next neighbors for each transcription factor in the pathway.

Usage

findxnextneighbors(data_omics, pws_morex_TFs, pwxTFs, order_neighbors)

Arguments

data_omics	OmicsData object.
pws_morex_TFs	list of transcription factors in identified pathways.
pwxTFs	numeric variable of pathway currently investigated (from pws_morexTFs).
order_neighbors	integer specifiying the order of the neighborhood: order 1 is TF plus its immediate neighbors.

Value

list of x next neighbors for each TF in the pathway.

MarenS2/pwOmics_maren documentation built on May 6, 2019, 3:27 p.m.