identTFTGsinPWs: Prepare OmicsData object for pathway information.

Description Usage Arguments Value

View source: R/pwOmics_helper_functions.R

Description

This function identifies the TFs in the pathway genes and determines their target genes on basis of the given (chosen) TF-target database(s).

Usage

1
identTFTGsinPWs(data_omics, temp_genelist)

Arguments

data_omics

OmicsData object.

temp_genelist

dataframe of unique gene IDs in PWs.

Value

list with first element being a genelist of the pathways and second being a target gene list of TFs.


MarenS2/pwOmics_maren documentation built on Aug. 30, 2017, 12:41 a.m.