genGenelists: Generate genelists from pathway databases.

Description Usage Arguments Value

View source: R/pwOmics_helper_functions.R

Description

This function generates genelists from the chosen pathway databases for further processing in detPathways function.

Usage

1
genGenelists(intIDs, pwdatabases)

Arguments

intIDs

list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA.

pwdatabases

vector indicating with which pathway database the pathways should be determined; possible choices are "biocarta", "kegg", "nci", "reactome".

Value

list of genelists of specified pathway databases.


MarenS2/pwOmics_maren documentation built on Aug. 30, 2017, 12:41 a.m.