getConsensusSTRINGIDs: Get consensus graph in STRING IDs.

Description Usage Arguments Value

View source: R/pwOmics_consensus_analysis.R

Description

Get consensus graph in STRING IDs.

Usage

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getConsensusSTRINGIDs(data_omics, tps, string_db, updown = FALSE,
  phospho = TRUE)

Arguments

data_omics

OmicsData object.

tps

integer specifying current timepoint under consideration.

string_db

STRING_db object.

updown

boolean value; TRUE in case up- and downregulation should be checked individually for intersection. Type of checking is defined with parameter 'phospho'.

phospho

boolean value; TRUE in case up- and downregulation should be checked based on provided downstream phosphoprotein influence from identifyPR function; FALSE in case up- and downregulation should be checked for without phosphoprotein database knowledge. Default is TRUE.

Value

igraph object consensus graph with STRING IDs (only including proteins and transcription factors).


MarenS2/pwOmics_maren documentation built on Aug. 30, 2017, 12:41 a.m.