genGenelistssub: Generate internally genelists from pathway databases.

Description Usage Arguments Value

View source: R/pwOmics_helper_functions.R

Description

This function generates genelists for a particular pathway database for further processing in detPathways function.

Usage

1
genGenelistssub(intIDs, database_int, PWDB_name)

Arguments

intIDs

list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA.

database_int

integer indicating database entry in indIDs (output of genintIDs); biocarta = 1, kegg = 2, nci = 4, reactome = 4.

PWDB_name

character; pathway database name.

Value

data.table of genelist of particular pathway database.


MarenS2/pwOmics_maren documentation built on Aug. 30, 2017, 12:41 a.m.