Description Usage Arguments Value
View source: R/pwOmics_helper_functions.R
This function generates genelists for a particular pathway database for further processing in detPathways function.
1 | genGenelistssub(intIDs, database_int, PWDB_name)
|
intIDs |
list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA. |
database_int |
integer indicating database entry in indIDs (output of genintIDs); biocarta = 1, kegg = 2, nci = 4, reactome = 4. |
PWDB_name |
character; pathway database name. |
data.table of genelist of particular pathway database.
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