getOmicsDataset: Get Omics dataset.

In MarenS2/pwOmics_maren: Pathway-based data integration of omics data

Description

This function returns the omics datasets of the experiment.

Usage

getOmicsDataset(data_omics, writeData = FALSE)

Arguments

data_omics	OmicsData object.
writeData	boolean value indicating if datasets should be written into csv file.

Value

list with protein data set as first element and gene data set as second element; both elements contain matrices with significant proteins/ genes/transcripts at the given time points.

Examples

data(OmicsExampleData)
data_omics = readOmics(tp_prots = c(0.25, 1, 4, 8, 13, 18, 24), 
tp_genes = c(1, 4, 8, 13, 18, 24), OmicsExampleData,
PWdatabase = c("biocarta", "kegg", "nci", "reactome"), 
TFtargetdatabase = c("userspec"))
getOmicsDataset(data_omics)

MarenS2/pwOmics_maren documentation built on May 6, 2019, 3:27 p.m.