API for MarenS2/pwOmics_maren
Pathway-based data integration of omics data

Global functions
OmicsExampleData	Man page
PWidentallprots	Man page Source code
PWidentallprotssub	Man page Source code
PWidenttps	Man page Source code
SteinerTree_cons	Man page Source code
TFidentallgenes	Man page Source code
TFidenttps	Man page Source code
addFeedbackLoops	Man page Source code
clusterTimeProfiles	Man page Source code
consDynamicNet	Man page Source code
createBiopaxnew	Man page Source code
createIntIDs	Man page Source code
findSignalingAxes	Man page Source code
findxneighborsoverlap	Man page Source code
findxnextneighbors	Man page Source code
genGenelists	Man page Source code
genGenelistssub	Man page Source code
genIntIDs	Man page Source code
generate_DSSignalingBase	Man page Source code
genfullConsensusGraph	Man page Source code
getAlias_Ensemble	Man page Source code
getAliasfromSTRINGIDs	Man page Source code
getBiopaxModel	Man page Source code
getConsensusSTRINGIDs	Man page Source code
getDS_PWs	Man page Source code
getDS_TFs	Man page Source code
getDS_TGs	Man page Source code
getFCsplines	Man page Source code
getGenesIntersection	Man page Source code
getOmicsDataset	Man page Source code
getOmicsTimepoints	Man page Source code
getOmicsallGeneIDs	Man page Source code
getOmicsallProteinIDs	Man page Source code
getProteinIntersection	Man page Source code
getSTRING_graph	Man page Source code
getTFIntersection	Man page Source code
getUS_PWs	Man page Source code
getUS_TFs	Man page Source code
getUS_regulators	Man page Source code
get_matching_transcripts	Man page Source code
getbipartitegraphInfo	Man page Source code
gettpIntersection	Man page Source code
identPWsofTFs	Man page Source code
identRegulators	Man page Source code
identTFTGsinPWs	Man page Source code
identTFs	Man page Source code
identifyPR	Man page Source code
identifyPWTFTGs	Man page Source code
identifyPWs	Man page Source code
identifyRsofTFs	Man page Source code
identifyTFs	Man page Source code
infoConsensusGraph	Man page Source code
loadGenelists	Man page Source code
loadPWs	Man page Source code
plotConsDynNet	Man page Source code
plotConsensusGraph	Man page Source code
plotConsensusProfiles	Man page Source code
plotTimeProfileClusters	Man page Source code
predictFCvals	Man page Source code
preparePWinfo	Man page Source code
print.OmicsData	Man page Source code
pwIntOmics	Man page
pwIntOmics-package	Man page
readOmics	Man page Source code
readPWdata	Man page Source code
readPhosphodata	Man page Source code
readTFdata	Man page Source code
readTFtargets	Man page Source code
selectPWsofTFs	Man page Source code
staticConsensusNet	Man page Source code
temp_correlations	Man page