getbipartitegraphInfo: Get TF-target gene information for the consensus graph.

Description Usage Arguments Value

View source: R/pwOmics_consensus_analysis.R

Description

Get TF-target gene information for the consensus graph.

Usage

1
getbipartitegraphInfo(data_omics, tps, updown = FALSE, phospho = TRUE)

Arguments

data_omics

OmicsData object.

tps

integer specifying current timepoint under consideration.

updown

boolean value; TRUE in case up- and downregulation should be checked individually for intersection. Type of checking is defined with parameter 'phospho'.

phospho

boolean value; TRUE in case up- and downregulation should be checked based on provided downstream phosphoprotein influence from identifyPR function; FALSE in case up- and downregulation should be checked for without phosphoprotein database knowledge. Default is TRUE.

Value

list of transcription factor target gene interactions.


MarenS2/pwOmics_maren documentation built on Aug. 30, 2017, 12:41 a.m.