PWidentallprotssub: Internal subfunction for all protein pathway identification.

Description Usage Arguments Value

View source: R/pwOmics_helper_functions.R

Description

Internal subfunction for all protein pathway identification.

Usage

1
PWidentallprotssub(data_omics, genelists, genelist_ind, datab)

Arguments

data_omics

OmicsData object.

genelists

lists of genelists from chosen pathway databases

genelist_ind

integer specifying pathway database genelist matching; 1 = biocarta, 2 = kegg, 3 = nci, 4 = reactome.

datab

character vector indicating database name for message.

Value

OmicsData object with identified pathways for each protein.


MarenS2/pwOmics_maren documentation built on Aug. 30, 2017, 12:41 a.m.