AverageSampleModuleZscore: AverageSampleModuleZscore apply the function...

In MattPM/scglmmr: Sample-level Single-cell Generalized Linear Multilevel Models in R

AverageSampleModuleZscore apply the function calc_avg_module_zscore to a pseudobulklist.

Description

AverageSampleModuleZscore apply the function calc_avg_module_zscore to a pseudobulklist.

Usage

AverageSampleModuleZscore(
  average.metacell.list,
  module.list,
  use.module.subset = TRUE,
  modules.subset.by.celltype = modules.test
)

Arguments

average.metacell.list	poorly named argument - the object created by PseudobulkList either an average or summed pseudobulk data
module.list	list of modules as named list each element is a vector of gene names
use.module.subset	TRUE or FALSE - calc a different set of modules for each celltype use with modules.subset.by.celltype
modules.subset.by.celltype	modules.subset.by.celltype is a list of modules to test with length = celltypes.vector and n modules = unique to subset

Value

returns a dataframe of module scores for each celltype

Examples

## Not run: 
# av  = object returned by PseudobulkList
av.zscore = AverageSampleModuleZscore(
 average.metacell.list = av,
 module.list = btm,
 use.module.subset = FALSE,
 )

## End(Not run)

MattPM/scglmmr documentation built on April 26, 2024, 12:55 a.m.