PlotHypergeometric: PlotHypergeometric - plot results returned by...

In MattPM/scglmmr: Sample-level Single-cell Generalized Linear Multilevel Models in R

PlotHypergeometric - plot results returned by RunHypergeometricTest

Description

PlotHypergeometric - plot results returned by RunHypergeometricTest

Usage

PlotHypergeometric(
  hyperg_result,
  p.adjust.filter = 0.05,
  genenumber_filter = 0,
  savepath = figpath,
  savename,
  title,
  height = 10,
  width = 8
)

Arguments

hyperg_result	result returned by 'RunHypergeometricTest'
p.adjust.filter	filter results
genenumber_filter	number of genes within an enrichment minimum.
savepath	save oath
savename	name of object saved to save_path
title	title of plot
height	ggsave param
width	ggsave param

Value

nothing

Examples

## Not run: 
load(termdf) # this term2gene dataframe is included in the package see clusterProfiler
hyp = scglmmr::RunHypergeometricTest(result_list = fit_res,
                                     TERM2GENE_dataframe = termdf,
                                     pval_threshold = 0.1,
                                     logFC_threshold = 0,
                                     usefdr_threshold = FALSE)
# plot results
scglmmr::PlotHypergeometric(hyperg_result = hyp,
                            p.adjust.filter = 0.1,
                            genenumber_filter = 2,
                            savepath = figpath,
                            savename = "name",
                            title = "title")
 
## End(Not run)

MattPM/scglmmr documentation built on April 26, 2024, 12:55 a.m.