RbindGseaResultList: RbindGseaResultList - prepare gsea result list for...

In MattPM/scglmmr: Sample-level Single-cell Generalized Linear Multilevel Models in R

RbindGseaResultList - prepare gsea result list for visualization funcitons GseaBubblePlot or GseaBarPlot; called by PlotFgseaList

Description

RbindGseaResultList - prepare gsea result list for visualization funcitons GseaBubblePlot or GseaBarPlot; called by PlotFgseaList

Usage

RbindGseaResultList(
  gsea_result_list,
  NES_filter = -Inf,
  padj_filter = NULL,
  pval_filter = NULL
)

Arguments

gsea_result_list	result returned by RunFgseaOnRankList
NES_filter	filter out results below this NES
padj_filter	filter out results above this adjusted p threshold

Value

a dataframe of subsetted gsea results for all celltypes

Examples

## Not run: 
d = scglmmr::RbindGseaResultList(gsea_result_list = gsea1,NES_filter = -Inf,padj_filter = 0.2)

## End(Not run)

MattPM/scglmmr documentation built on April 26, 2024, 12:55 a.m.