GetContrastResults: GetContrastResults - return results from a contrast fit on...

In MattPM/scglmmr: Sample-level Single-cell Generalized Linear Multilevel Models in R

GetContrastResults - return results from a contrast fit on list of celltypes from RunVoomLimma using topTable

Description

GetContrastResults - return results from a contrast fit on list of celltypes from RunVoomLimma using topTable

Usage

GetContrastResults(limma.fit.object.list, coefficient.number, contrast.name)

Arguments

limma.fit.object.list	the results returned by RunVoomLimma, to get coefficiennt from dreamMixedModel use GetContrastResultsRaw
coefficient.number	corresponds to the contrast, the nmber is in order of the contrast matrix
contrast.name	this does not have to match the exact contrast name used in the contrast matrix, it is here to force / remind the user to choose the correct contrast.

Value

a list of dataframes with contrast results indexed by cell type

Examples

## Not run: 
res = scglmmr::GetContrastResults(limma.fit.object.list = bl, coefficient.number = 1, contrast.name = "test")

## End(Not run)

MattPM/scglmmr documentation built on April 26, 2024, 12:55 a.m.