GetTidySummary: GetTidySummary - tidy data summary for a single cell type

In MattPM/scglmmr: Sample-level Single-cell Generalized Linear Multilevel Models in R

GetTidySummary - tidy data summary for a single cell type

Description

GetTidySummary - tidy data summary for a single cell type

Usage

GetTidySummary(av.exprs.list, celltype.index, genes.use)

Arguments

av.exprs.list	- object returned by PseudobulkList (use average or first convert summed counts to cpm)
celltype.index	- index of celltype to ret results see names of PseudobulkList object
genes.use	- subet of genes to use

Value

a tidy dataframe

Examples

#' @examples
## Not run: 
gene_highlight =  c("IRF1","TNFRSF17","ABL1")
mono = GetTidyCohort(av.exprs.list = av, celltype.index = 7, genes.use = gene_highlight)
PlotGeneDistCohort(merged_av_data = mono,
                   save_name = "mono_highlight_512",
                   save_path = figpath,
                   title = paste0(names(av[7]), "genesub" ),
                   height = 3.8, width = 4.5,
                   nrow = 2)
 
## End(Not run)

MattPM/scglmmr documentation built on April 26, 2024, 12:55 a.m.