GetRankResultsRaw: GetRankResultsRaw get list of gene ranks by raw t statistic...

In MattPM/scglmmr: Sample-level Single-cell Generalized Linear Multilevel Models in R

GetRankResultsRaw get list of gene ranks by raw t statistic for fGSEA. for results returned by dreamMixedModel

Description

GetRankResultsRaw get list of gene ranks by raw t statistic for fGSEA. for results returned by dreamMixedModel

Usage

GetRankResultsRaw(contrast.result.raw.list)

Arguments

contrast.result.raw.list

results returned by dreamMixedModel

Value

list of gene ranks by t stat – use as argument to 'RunFgseaOnRankList'

Examples

## Not run: 
fit_res = scglmmr::GetContrastResultsRaw(limma.fit.object.list = fit,
                                         coefficient.number = 1,
                                         contrast.name = "foldchangedifference")
fit_rank = scglmmr::GetRankResultsRaw(contrast.result.raw.list = fit_res)

## End(Not run)

MattPM/scglmmr documentation built on April 26, 2024, 12:55 a.m.