PlotGeneDistCohort: PlotGeneDistCohort

In MattPM/scglmmr: Sample-level Single-cell Generalized Linear Multilevel Models in R

PlotGeneDistCohort

Description

PlotGeneDistCohort

Usage

PlotGeneDistCohort(
  merged_av_data,
  save_path,
  save_name,
  title = NULL,
  nrow = 5,
  height = 8,
  width = 10,
  plot_subset = FALSE,
  genes_plot = NULL
)

Arguments

merged_av_data	data returned for a single cell type by 'GetTidySummary'
save_path	file path to save results
save_name	name of plot saved to 'save_path'
title	title of plot
nrow	number of rows to facet genes plotted on
height	ggsave param
width	ggsave param
plot_subset	whether to subset to some of the genes in 'merged_av_data'
genes_plot	the subset of genes to plot

Value

nothing

Examples

## Not run: 
gene_highlight =  c("IRF1","TNFRSF17","ABL1")
mono = GetTidyCohort(av.exprs.list = av, celltype.index = 7, genes.use = gene_highlight)
PlotGeneDistCohort(merged_av_data = mono,
                   save_name = "mono_highlight_512",
                   save_path = figpath,
                   title = paste0(names(av[7]), "genesub" ),
                   height = 3.8, width = 4.5,
                   nrow = 2)
 
## End(Not run)

MattPM/scglmmr documentation built on April 26, 2024, 12:55 a.m.