#' arma_est_bip_tau
#'
#' The function arma_est_bip_tau(x,p,q) comuptes BIP tau-estimates of the
#' ARMA model parameters. It also computes an outlier
#' cleaned signal using BIP-ARMA(p,q) predictions
#'
#' @param x: numeric vector. The signal
#' @param p: AR order
#' @param q: MA order
#' @param tolx: threshold value that is passed to pracma::lsqnonlin.
#' Default = 1e-8
#'
#'
#' @return result: named list with following fields
#' \item{ar_coeffs}{numeric vector of length p. BIP-AR(p) tau estimates}
#' \item{ma_coeffs}{numeric vector of length q. BIP-AR(q) tau estimates}
#' \item{inno_scale}{numeric, BIP s-estimate of the innovations scale}
#' \item{ar_coeffs_init}{numeric vector of length p. Robust starting point for estimation}
#' \item{ma_coeffs_init}{numeric vector of length q. Robust starting point for estimation}
#'
#'
#'
#' @references
#'
#' "Robust Statistics for Signal Processing"
#' Zoubir, A.M. and Koivunen, V. and Ollila, E. and Muma, M.
#' Cambridge University Press, 2018.
#'
#' "Bounded Influence Propagation \eqn{\tau}-Estimation: A New Robust Method for ARMA Model Estimation."
#' Muma, M. and Zoubir, A.M.
#' IEEE Transactions on Signal Processing, 65(7), 1712-1727, 2017.
#'
#'
#' @examples
#'
#' library(signal)
#'
#' N <- 500
#' a <- rnorm(N)
#' p <- 1
#' q <- 0
#' x <- signal::filter(1, c(1, -0.8), a)
#'
#' arma_est_bip_tau(x, p, q)
#'
#' @note
#' file is in dependentData_arma_Est_BipTau.R
#'
#' @export
#' @importFrom zeallot %<-%
#' @importFrom pracma roots
#' @importFrom utils head
arma_est_bip_tau <- function(x, p, q, tolx = 1e-8){
result <- list()
# to avoid no visible binding for global variable note
a_bip_sc <- x_filt <- NULL
if(p == 0 && q == 0){
result$inno_scale < tau_scale(x)
warning('Please choose a nonzero value for p or q')
return(result)}
if(length(x) <= (p + q)){
warning('There are too many parameters to estimate for chosen data size. Reduce model order or use a larger data set.')
return(result)
}
# Robust starting point by BIP AR-S approximation
beta_initial <- robust_starting_point(x, p, q)[[1]]
# remove intercept from coefficients
beta_initial <- head(beta_initial, -1)
# objective function for ARMA model and BIP-ARMA model
F <- function(beta) arma_tau_resid_sc(x, beta, p, q)
F_bip <- function(beta) bip_tau_resid_sc(x, beta, p, q)[[1]]
beta_arma <- lsqnonlin(F, beta_initial, options = list(tolx = tolx))$x
beta_bip <- lsqnonlin(F_bip, beta_initial, options = list(tolx = tolx))$x
# innovations tau-scale for ARMA model
a_sc <- arma_tau_resid_sc(x, beta_arma, p, q)[[1]]
# innovations m-scale for BIP-ARMA model
c(a_bip_sc, x_filt) %<-% bip_tau_resid_sc(x, beta_bip, p, q)
if( a_sc < a_bip_sc) beta_hat <- beta_arma else beta_hat <- beta_bip
# final m-scale
a_tau_sc <- min(a_sc, a_bip_sc)
# Output the results
phi_bip_tau <- c()
phi_bip_tau_init <- c()
if(0 < p){
phi_bip_tau <- -beta_hat[1:p]
phi_bip_tau_init <- -beta_initial[1:p]
}
theta_bip_tau <- c()
theta_bip_tau_init <- c()
if(0 < q){
theta_bip_tau <- -beta_hat[(p+1):(p+q)]
theta_bip_tau_init <- -beta_hat[(p+1):(p+q)]
}
result$ar_coeffs <- phi_bip_tau
result$ma_coeffs <- theta_bip_tau
result$inno_scale <- a_tau_sc
result$cleaned_signal <- x_filt
result$ar_coeffs_init <- phi_bip_tau_init
result$ma_coeffs_init <- theta_bip_tau_init
return(result)
} # end function
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